Ecological Archives E094-257-A3

Johannes R. Björk, C. Díez-Vives, Rafel Coma, Marta Ribes, José M. Montoya. 2013. Specificity and temporal dynamics of complex bacteria–sponge symbiotic interactions. Ecology 94:2781–2791. http://dx.doi.org/10.1890/13-0557.1

Appendix C. A table summarizing information about excised and sequenced DGGE bands, including GeneBank accesion numbers, taxonomic affiliation, and membership to sponge-specific clusters.

Table C1. Acc. corresponds to the Accession Number of each sequence in GeneBank. Band ID. corresponds to excised and the sequenced DGGE bands for each sponge host and the bacterioplankton (see Fig. A1). Phylogenetic affiliation corresponds to the known taxonomy of each sequenced DGGE band. SC or SCC clusters corresponds to if the sequenced band is part of a sponge-/sponge-coral-specific cluster.

Acc.

Band ID.

Phylogenetic affiliation*

SC or SCC clusters

α-Proteobacteria

 

KC200496

     147Da_b13

Rhodobacterales>Ruegeria a

no

KC200497

     148Da_b15

Rhodobacterales>Ruegeria a

no

KC200513

     191Cr_b6

Rhizobiales>OCS116 clade

no

KC200495

     143Da_b6

Sphingomonadales>Erythrobacter b

no

KC200509

     180Da_b20

Rhodospirillales>Thalassospira a

no

KC200510

     182Da_b24

Rhodospirillales>Thalassospira a

no

KC200519

     203Cr_b26

Rickettsiales a

SC109

KC200538

     69Da_b8

Rickettsiales a

no

KC200494

     135Da_b14

Rickettsiales a

no

KC200531

     232Da_b12

Rickettsiales  a

no

KC200530

     231Da_b9

Rickettsiales a

no

KC200540

     70Da_b17

Rickettsiales  a

no

KC200511

     183Da_b25

Rickettsiales a

no

KC200521

     206Bp_b26

Rhodobacterales>Roseobacter a

no

KC200524

     214.1Bp_b21

Rhodobacterales a

no

KC200507

     18.1Bp_b35

Rhodospirillales>Defluviicoccus a

no

γ-Proteobacteria

KC200516

     194Cr_b12

KI89A clade b

SC142

KC200500

     150Ao_b7

KI89A clade b

SC142

KC200541

     80Cr_b13

Oceanospirillales>Endozoicomonas a

no

KC200504

     168Ao_b17

HOC36 a

SCC32

KC200525

     214.2Bp_b21

Thriotrichales>Thiothrix a

no

KC200526

     215Bp_b33

Oceanospirillales>Pseudospirillum a

no

KC200508

     18.2Bp_b35

Alteromonadales>OM60(NOR5) clade a

no

β-Proteobacteria

KC200491

     117Da_b18

Nitrosomonadales b

SC112

KC200498

     149Da_b23

Nitrosomonadales b

SC112

KC200499

     14Bp_b28

Hydrogenophilales>Thiobacillus a

no

KC200502

     15Bp_b29

Hydrogenophilales>Thiobacillus a

no

KC200505

     16Bp_b30

Hydrogenophilales>Thiobacillus  a

no

δ-Proteobacteria

KC200518

     201Cr_b23

Desulfurellales  a

SC121

KC200536

     58Ao_b2

Myxococcales a

SC116

KC200486

     106Ao_b15

Sh765B-TzT-29 a

SCC30

KC200503

     165Ao_b13

Sh765B-TzT-29 a

SCC30

Bacteroidetes

KC200539

     6Bp_b7

Flavobacteriales>NS9 marine group a

no

KC200545

     9Bp_b14

Flavobacteriales>NS9 marine group a

no

Deferribacteres

KC200515

     193Cr_b11

PAUC34f  marine benthic group a

no

Gemmatimonadetes

KC200488

     109Ao_b20

PAUC43f  marine benthic group a

no

Acidobacterias

KC200544

     98Cr_b28

Acidobacteriales a

SCC5

KC200543

     88Cr_b30

Acidobacteriales a

SCC4

KC200520

     205Cr_b29

Acidobacteriales a

SCC4

KC200542

     82Cr_b18

Acidobacteriales a

no

Actinobacteria

KC200506

     172Ao_b28

Acidimicrobiales a

SC23

KC200523

     213Bp_b18

Acidimicrobiales a

no

KC200537

     5Bp_b6

Acidimicrobiales a

no

KC200522

     212Bp_b16

Acidimicrobiales a

no

Cyanobacterias

KC200535

    42Da_b27

Synechococcus a

no

KC200492

    130Da_b28

Prochlorococcus a

no

KC200532

    23Bp_b42

Prochlorococcus a

no

KC200527

    216Bp_b38

Prochlorococcus a

no

Chloroflexi

KC200512

    188Cr_b2

Anaeorilineales a

SCC11

KC200493

    132Ao_b6

Anaeorilineales a

SCC11

KC200501

    158Ao_b5

Anaeorilineales a

SCC11

KC200514

    192Cr_b9

SAR202 clade a

SCC13

KC200489

    110Ao_b21

SAR202 clade a

SC45, SCC15

KC200517

    198Cr_b19

SAR202 clade a

SC43

KC200529

    221Ao_b12

SAR202 clade a

SC43

KC200485

    102Ao_b10

SAR202 clade a

SC43

KC200528

    220Ao_b11

SAR202 clade a

SC43

KC200534

    31Ao_b18

SAR202 clade a

no

KC200533

    252Cr_b27

TK10 a

SC46

KC200490

    114Ao_b33

TK10 a

SC46

KC200487

    108Ao_b19

Caldilineales>Caldilinea b

SC36

*Based on the SILVA taxonomy (a) or RDP II (b).

#Sponge-specific clusters (SC); sponge- and coral-specific clusters (SCC)


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