Summary

Last data: Sat 6 Aug 2016 16:56:06 BST


total reads 818
total base pairs 603677
mean 737.99
median 82
min 5
max 30199
N25 9259
N50 4845
N75 1757
 
BLASTN hits:
| silene: 1105 946.9681 8 
| beta: 1271 1087.9974 11 
| sorbus: 933 825.0049 14 
| napenthes: 0 0 0 
| erycina: 1281 1147.011 19 
| lyrata: 116 110.0008 3 
| thaliana: 13433 11490.9503 99 

Read rate (throughput)

This shows how many strands of DNA we have read so far, and how many DNA letters we've read overall.

The number above looks quite big, but we're actually attempting to match DNA with only a tiny fraction of the genome - most plant genomes have more than 1,000,000,000 letters of DNA!

View details »

ID - Mystery sample

This shows which species match the reads we've sequenced. The larger the wedge is, the closer the mystery DNA matches that species.

We're using a process called BLASTN. This is a program that compares the DNA reads we've just sequenced to a collection of reference reads we prepared in the lab last week - a bit like matching pieces in a jigsaw.

View details »

BLAST

Summary table

(DataTables render of blast hits)